川西林盘植物群落结构历史变化特征分析——以成都市郫都区为例

林盘是川西平原地区一种极具特色的传统农村聚落形态,具有突出的农业文化遗产价值。植被是构成林盘的核心要素,了解植物群落的历史变化过程可以为传统林盘的保护工作提供科学依据。本研究首先通过查阅历史资料掌握传统林盘植物群落的结构特征,然后选取成都市郫都区4个林盘样地和3个灌渠边林地进行植物群落调查,从而比较不同时期林盘植物群落结构。调查结果显示,目前林盘植物群落结构发生的主要变化包括乔木层中的传统优势种杉木、楠木及柏树被黑壳楠取代,林盘植被趋向单一化;竹类的物种丰富度下降明显,竹林退化严重;灌渠林地中桤木及柏树被枫杨和构树取代,竹类基本消失。川西平原地区社会和经济的变迁破坏了传统农业系统中人口、耕地和林盘之间的平衡,从而导致了林盘植被群落结构的改变。     

Regional and temporal differentiation of virulence phenotypes of Puccinia triticina from common wheat in Russia during the period 2001–2018

Leaf rust, caused by the fungus Puccinia triticina, is one of the most damaging rust diseases of wheat in Russia. Populations of P. triticina were monitored in seven regions of Russia from 2001 to 2018, with a total of 5,191 single urediniospore isolates from bread wheat (Triticum aestivum) being analysed. Populations have changed significantly in all regions since 2012, after 2 years of drought (2010–2011). Regional collections of P. triticina were also significantly different between the two periods 2001–2009 and 2012–2018, with changes along two geographic gradients from West Siberia to the north-west and south-west (North Caucasia) of the European part of Russia. All tested isolates were avirulent to resistance gene Lr9 in 2001–2009 but, since 2010, virulence to Lr9 has occurred and annually increased in the Asian part of Russia (Ural and West Siberia) due to deployment of cultivars with the Lr9 gene. Virulence to Lr2a and Lr15 was considerably lower in Dagestan (6%–33%) and all European regions (35%–67%) than in Asian regions (84%–96%). During 2001–2009, virulence on Lr1 was also lower in Dagestan (33%) and the European regions (50%–77%) than in Asia (91%–96%); however, by 2012–2018, nearly all isolates were virulent on Lr1. Remarkable changes were observed in frequencies of P. triticina races defined by their virulence/avirulence to Lr1 and Lr2a genes. We postulate the P. triticina population in Dagestan is specific to that area and pathogen populations in European and Asian parts of Russia are distinct.     

The use of infrared spectroscopy and machine learning tools for detection of Meloidogyne infestations

Plant parasitic nematodes are generally soilborne pathogens that attack plants and cause economic losses in many crops. The infested plants show nonspecific symptoms or, often, are symptomless; therefore, diagnosis is performed by taking soil and root tissue samples. Here, we show that a combination of different infrared spectra analysis and machine learning algorithms can be used to detect plant parasitic nematode infestations before symptoms become visible, using leaves instead of roots and soil as samples. We found that tomato and guava plants infested with Meloidogyne enterorlobii produced different spectral patterns compared to uninfested plants. Using partial spectra from 1,450 to 900/cm as the "fingerprint region", principal component analyses indicated that after 5 (tomatoes) or 8 weeks (guava), plants with no visible symptoms of infestations were positively diagnosed. To improve the early detection response, we used machine learning modelling. A support vector machine (SVM) was used to obtain more robust, accurate models. The SVM model contained 34 support vectors, 17 for each level. The overall performance of the model was >97% and the total accuracy was significantly higher, demonstrating the absence of chance prediction. The best prediction of infestation was obtained at the second and fourth weeks for tomatoes and guavas, respectively, reducing the diagnostic time by half. The combined application of these techniques reduces the processing time from field to laboratory and shows enormous advantages by avoiding root and soil sampling.     

Strategy to identify resistance to white mould associated with high yield for irrigated common bean in Brazil

Development of common bean cultivars with partial white mould resistance through breeding techniques has been a challenge in Brazil. As yet, lines/cultivars from breeding programmes have not been investigated for resistance; therefore, this study screened 107 lines/cultivars for their reactions to white mould in 14 preliminary trials conducted under irrigation. Thirteen resistant lines/cultivars (three of Andean origin) and six Mesoamerican cultivars (three intermediately resistant and three susceptible) were selected for further investigation. These lines/cultivars and the resistant control A195 were evaluated in six advanced trials and two straw tests to assess the effectiveness of the screening procedure. In 11 preliminary trials, screenings were performed under moderate/high or higher disease pressure. These pressures occurred in two advanced trials in which, when yields were averaged across moderate/high and high pressures, 10 Mesoamerican lines/cultivars selected for resistance yielded 14%, 23%, and 38% more than intermediately resistant cultivars, A195, and susceptible cultivars, with median disease ratings (1–9 scale) of 4.5, 5.7, 5.7, and 6.7, respectively. In the straw test, three Andean lines/cultivars (A195 included) and two susceptible cultivars in the field were among those with the highest levels of physiological resistance. Thus, field rating under high disease pressure and greenhouse rating did not correlate significantly, suggesting that field trials are critical to evaluating resistance and to identifying high-yielding beans. Therefore, lines/cultivars from breeding programmes assessed in field trials may provide a low cost and fast way to identify high-yielding bean cultivars with partial resistance to white mould in the subtropical southern hemisphere.     

五常市杂种落叶松幼龄期变异分析

以5年生36个杂种落叶松家系为材料,测定其树高、胸径生长性状,估算变异系数、遗传力和遗传增益,筛选出优良家系。结果表明:各家系的树高、胸径存在较丰富变异,树高变异系数小于胸径,树高、胸径极显著相关(P<0.01),家系间树高、胸径差异均达极显著差异水平(P<0.01)。以10%的入选率,初选出家系1317、1324、1318、和1327为优良家系,树高平均增益为15.98%,胸径平均增益为29.46%。     

天山云杉林冠层结构对草本物种多样性的影响

为研究天山云杉林冠层特征与林下草本物种多样性的相互关系，以新疆天格尔森林公园天山云杉林的4个龄级的林分（幼林龄、中林龄、近熟林、成熟林）为研究对象，以冠层分析仪获得的冠层结构特征和林下光环境指数等野外实际调查数据为依据，通过计算 α 多样性指数分析4个龄级的草本物种多样性，利用多元统计方法研究冠层结构对草本多样性的影响。结果表明，各个指标在不同龄级间均有一定的差异，且随着林分的生长和更新，天山云杉林呈现林冠开度逐渐减小、叶面积指数增大、林下光辐射均减弱、物种多样性指数均减小的趋势；典型模型表明林冠开度对冠层结构起到主要作用（呈极显著正相关P<0.01），叶面积指数次之（呈极显著负相关P<0.01）；在林下辐射中，林下总辐射对林内光环境起主要作用；相比冠层结构，林下光照对草本层物种多样性的作用更大，其中林冠开度和丰富度指数之间呈显著正相关，林下总辐射、林下直射辐射和多样性指数、均匀度指数之间均呈显著正相关。     

Genetic diversity and aggressiveness of Calonectria pteridis in Eucalyptus spp.

Calonectria leaf blight, caused by Calonectria pteridis, is currently one of the main foliar diseases in eucalypt plantations in Brazil. In warm and high rainfall regions, the disease can be a limiting factor for eucalypt production when planting susceptible genotypes. The most effective method for controlling this disease in the field is the use of resistant genotypes, which requires knowledge of the genetic variability and aggressiveness of the pathogen population for effective deployment of plant resistance. This work evaluated the genetic diversity and aggressiveness of C. pteridis populations obtained from infected eucalypt plants in Monte Dourado (Pará state) and Imperatriz (Maranhão state), Brazil. To study the genetic diversity, 16 ISSR primers were tested, five of which amplified polymorphic, reproducible and informative bands. Thirty-one closely related genotypes were identified from 84 isolates studied, indicating that the population has a low genetic diversity. The aggressiveness of seven isolates, selected according to geographic origin and their clustering in the ISSR-based dendogram, was determined by inoculation of a hybrid Eucalyptus grandis × E. urophylla clone under controlled conditions. Disease severity was assessed by both measuring the percentage of plant defoliation and assigning a score according to a diagrammatic scale of symptoms. A high correlation between the two evaluation methods was observed, which revealed significant differences in aggressiveness among the isolates. The diagrammatic scale is recommended for disease evaluation because results are obtained much faster, before the occurrence of severe defoliation. No correlation between clustering in the ISSR-based phylogenetic analysis and aggressiveness was observed.     

Effects of genetically modified and non‐genetically modified soybeans with different heat treatments on growth and health of Cyprinidae species with different feeding habits

An 8‐week growth trial was conducted to investigate the effects of non‐genetically modified (nGM) soybean (Youchun 06‐1) and genetically modified (GM) soybean (Roundup Ready^®) with and without a heat treatment on the growth and health of three Cyprinidae species with different feeding habits (grass carp Ctenopharyngodon idellus, gibel carp Carassius auratus gibelio, and black carp Mylopharyngodon piceus; body weight: 283.0 ± 2.0 g, 60.5 ± 0.7 g, and 261.4 ± 3.1 g). Five diets (FM, nGMS, hnGMS, GMS, and hGMS) were made with fishmeal and full‐fat soybean (Youchun 06‐1, heat‐treated Youchun 06‐1, Roundup Ready^®, and heat‐treated Roundup Ready^®). The FM diet contained fishmeal as the sole protein source. The experimental diets contained full‐fat soybean meal as 60% of dietary protein. Both temperature (60, 80, 100, and 120°C) and duration (1 and 2 hr) of heating influenced trypsin inhibitor activity (TIA) and protein solubility of nGM soybean and GM soybean. The TIA in GM soybean was higher than that in nGM soybean. After heating at 120°C for 2 hr, each amino acid of soybean treatment showed a slight decline. Neither source of soybean nor heat treatment affected the growth performance, feed utilization, chemical composition of the whole fish body and muscle, and lipase or amylase activity of the three Cyprinidae species (p > 0.05). Heat treatment of soybean meal slightly increased the plasma antioxidant capacity of the three fish and plasma cholecystokinin of black carp and grass carp. The unheated soybean treatment adversely affected the height and density of black carp intestinal villi, and all the soybean treatments caused disruption of the grass carp intestinal epithelium.     

Genetic diversity and structure of Northern Sheatfish (Silurus soldatovi) assessed by newly developed and cross‐species microsatellites

Twenty‐five polymorphic microsatellite markers, including 13 newly isolated markers and 12 existing cross‐species markers, were used to assess the genetic variation of 141 individuals from three cultured stocks of northern sheatfish, Silurus soldatovi, in China. Samples were collected from Heilongjiang (H), Tongerpu (T) and Liaoning (L). Allelic richness, expected and observed heterozygosity among 25 loci were calculated, and the mean A_e, H_o and H_e were estimated in three stocks. In low polymorphic locus HLJcf19 and HLJcf38, most individuals in all three stocks were homozygous and had only one same allele, while only few heterozygous individuals had the other allele in one certain stock. And all the three stocks showed excess of heterozygotes, because of significant negative F_IS values. Genetic distance, UPGMA dendrogram, as well as structure analysis, all indicated that Stock H and L were closer among three stocks. The results revealed that though all stocks had no reduction in recent time, their effective population size were significantly lower to the ideal value.     

Variability in the performance of juvenile Chinook salmon is explained primarily by when and where they resided in estuarine habitats

Estuarine habitats provide rearing opportunities for the juvenile life stage of anadromous fishes. Because survival is positively correlated with juvenile performance, these estuarine habitats play an important role in population abundance and productivity. To provide information for the recovery of several depressed stocks of Chinook salmon in the Columbia River Basin, we sought to identify the factors that explain variability in performance. Using otolith‐derived estimates of juvenile somatic growth rate as an index of recent performance, we observed a negative nonlinear relationship between growth rate and day of year, and a decreasing and increasing trend of growth rate over the 8 years of this study and distance from the river mouth respectively. Using a generalised linear modelling approach, we found that variability in juvenile somatic growth rate was best explained by where and when individuals were collected, their body size, contaminant loads, stock of origin, and whether a fish was hatchery produced or unmarked. Lastly, we argue that a considerable improvement to the growth rate of juveniles in estuarine habitats is physiologically possible. The results of this 8‐year study provide a baseline of the performance of juvenile Chinook salmon to evaluate habitat restoration programs and to compare against future anthropogenic conditions.